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Annotation of the H3Africa genotyping array

online resource
posted on 08.12.2020, 09:42 by Ayton Meintjes, Nicola Mulder, Scott Hazelhurst, Gerrit Botha, Ananyo Choudhury, Mamana Mbiyavanga
The linked site (chipinfo.h3abionet.org) serves annotation of the genotyping microarray designed by H3ABioNet and the H3Africa Consortium.

The content of the array includes:
  • A backbone of probes, selected from existing Illumina pools, selected to maximise imputation of African populations
  • Novel variants, discovered from African sequence data
  • Markers requested by the H3Africa projects
  • Clinically relevant markers seen to be polymorphic in African datasets
The site provides information on the content of the array, including.
  • See if a specific marker is assayed on the array
  • View the coverage of a region
  • Visualise the orientation of the probe sequence of a probeset
  • See probe plots from a real dataset
  • View annotations

Funding

H3ABioNet: informatics solutions for H3Africa

National Human Genome Research Institute

Find out more...

History

Department/Unit

Computational Biology Group, IBMS

Licence

Exports